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Error in using HPC

PostPosted: Mon May 30, 2016 6:38 am
by Siavashpour
Dear Sir
While we are running FDMod3D executable file on a HPC computing facility, we face this error which I have attached to this email. Please help us if you know what we have to do. We could define the path for dynamic libraries but segmentation fault still exists. The HPC Linux is CentOS and we use gfortran as compiler and openmpi to implement parallel processing. We compiled and run FDMod3D with these three lines in Makefile:

FD = mpif90

I am looking forward to hear from you.

Best Regards,

Re: Error in using HPC

PostPosted: Tue May 31, 2016 11:38 am
by fdsim
Dear Siavashpour,

in addition to the attached screenshot, could you also include information about how you started the program?


Re: Error in using HPC

PostPosted: Tue May 31, 2016 12:35 pm
by Siavashpour
Dear Dr. Galis
I started it with ./FDMod3D but now I start it with mpirun -np 8 ./FDMod3D and the problem solved. Now I have a problem in running FDSim3D which I have explained it in another post.